Ugh, yeah, the bees. It's like, who came up with all this stuff, like stitching people together and all that???
Beverly's probably dead, knowing what Hannibal capable of. But... wouldn't that make things so obvious though (at least to Will)?
It'd also have to seem like she either disappeared (because who else would go into Hannibal's basement to find her) or she'd have to be moved/staged as being killed elsewhere.
Either way, this is bad for Hannibal. Obviously it's bad if she got away, unless he managed to threaten her somehow.